Provides the public interface for search algorithms. More...
#include <seqan3/std/algorithm>
#include <seqan3/std/ranges>
#include <seqan3/core/algorithm/algorithm_result_generator_range.hpp>
#include <seqan3/core/algorithm/detail/algorithm_executor_blocking.hpp>
#include <seqan3/core/configuration/configuration.hpp>
#include <seqan3/range/views/convert.hpp>
#include <seqan3/range/views/deep.hpp>
#include <seqan3/range/views/persist.hpp>
#include <seqan3/range/views/zip.hpp>
#include <seqan3/search/configuration/default_configuration.hpp>
#include <seqan3/search/configuration/on_result.hpp>
#include <seqan3/search/configuration/parallel.hpp>
#include <seqan3/search/detail/search_configurator.hpp>
#include <seqan3/search/detail/search_traits.hpp>
Go to the source code of this file.
Classes | |
struct | seqan3::detail::search_configuration_validator |
Class used to validate the search configuration. More... | |
Namespaces | |
seqan3 | |
The main SeqAn3 namespace. | |
seqan3::detail | |
The internal SeqAn3 namespace. | |
Functions | |
template<typename index_t , typename configuration_t = decltype(search_cfg::default_configuration)> | |
auto | seqan3::search (char const *const queries, index_t const &index, configuration_t const &cfg=search_cfg::default_configuration) |
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. | |
template<typename index_t , std::ranges::forward_range queries_t, typename configuration_t = decltype(search_cfg::default_configuration)> | |
auto | seqan3::search (queries_t &&queries, index_t const &index, configuration_t const &cfg=search_cfg::default_configuration) |
Search a query or a range of queries in an index. More... | |
template<typename index_t , std::ranges::forward_range queries_t, typename configuration_t = decltype(search_cfg::default_configuration)> | |
requires std::ranges::forward_range< std::ranges::range_reference_t< queries_t > > &&!std ::same_as< range_innermost_value_t< queries_t >, typename index_t::alphabet_type > auto | seqan3::search (queries_t &&queries, index_t const &index, configuration_t const &cfg=search_cfg::default_configuration) |
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. | |
template<typename index_t , std::ranges::forward_range query_t, typename configuration_t = decltype(search_cfg::default_configuration)> | |
auto | seqan3::search (query_t &&query, index_t const &index, configuration_t const &cfg=search_cfg::default_configuration) |
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. | |
template<typename index_t , typename configuration_t = decltype(search_cfg::default_configuration)> | |
auto | seqan3::search (std::initializer_list< char const *const > const &queries, index_t const &index, configuration_t const &cfg=search_cfg::default_configuration) |
This is an overloaded member function, provided for convenience. It differs from the above function only in what argument(s) it accepts. | |
Provides the public interface for search algorithms.